Scientific Archives - Page 18 of 34

EMBOSS – software analysis package for molecular biology

EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.

Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.

The Taverna workbench is an open source software tool for designing and executing bioinformatics workflows created by the myGrid project.

geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics.

The Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).

Great libraries and tools that are ideal for mathematicians working with Python.

statsmodels is a Python package that provides a complement to SciPy for statistical computations.

mpmath is a Python library for arbitrary-precision floating-point arithmetic.

ADiPy is an open source Python automatic differentiation library. It’s a simple tool for handling arbitrary order automatic differentiation.

patsy is a Python library for describing statistical models (especially linear models) and building design matrices.

tidytext is text mining for word processing and sentiment analysis using ‘dplyr’, ‘ggplot2’, and other tidy tools.

quanteda (Quantitative Analysis of Textual Data) is an R package for managing and analyzing text.

wordcloud creates attractive word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots.

tm (shorthand for Text Mining Infrastructure in R) provides a framework for text mining applications within R.