Bokeh is an interactive visualization library that targets modern web browsers for presentation.
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Category: Scientific
matplotlib – Python 2D plotting library
matplotlib is a pure Python 2D plotting library designed to bring publication quality plotting to Python.
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10 Best Free and Open Source Linux Biology Tools
Biologists will be eager to use this biology software for research. We pick the finest free and open source biology tools for Linux.
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SeqViz – protein sequence viewer
SeqViz is a DNA, RNA, and protein sequence viewer written in the TypeScript programming language.
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NAMD – high-performance simulation of large biomolecular systems
NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems.
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VMD – molecular visualization program
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
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simuPOP – general-purpose individual-based forward-time population genetics simulation environment
simuPOP is a general-purpose individual-based forward-time population genetics simulation environment.
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MUSCLE – multiple alignment software
MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences.
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SeaView – graphical user interface for molecular phyologeny
SeaView is a multi-platform, graphical user interface for multiple sequence alignment and molecular phylogeny.
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TREE-PUZZLE – maximum likelihood analysis for nucleotide, amino acid, and two-state data
TREE-PUZZLE (previously known as PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling.
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