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Category: Scientific

plotting-software

AlphaPlot generates 2D and 3D plots

April 7, 2025 Steve Emms GUI, Scientific

AlphaPlot is a computer program for interactive scientific graphing and data analysis. It can generate different types of 2D and 3D plots.

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Chemistry

JChemPaint is a chemical 2D structure editor

April 4, 2025 Steve Emms GUI, Scientific

JChemPaint (or JCP for short) is the editor and viewer for 2D chemical structures developed using the Chemistry Development Kit (CDK).

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Machine Learning

8 Useful Free Books to Learn about Deep Learning

March 27, 2025 Erik Karlsson Books, Scientific

Deep Learning is a subset of Machine Learning that uses multi-layers artificial neural networks to deliver state-of-the-art accuracy

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Machine Learning in Linux

18 Useful Free Books to Learn about Machine Learning

March 25, 2025 Erik Karlsson Books, Scientific

Machine Learning is the practice of using algorithms to parse data, learn insights from that data, and then make a determination or prediction.

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Machine Learning

Machine Learning in Linux: Stability Matrix – Package Manager for Stable Diffusion

March 19, 2025 Steve Emms Graphics, Reviews, Scientific

Stability Matrix is a multi-platform package manager and inference UI for AI image generation.

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Chemistry

ChemCanvas – 2D chemical drawing tool

March 17, 2025 Steve Emms GUI, Scientific

ChemCanvas is a chemical drawing tool. You can draw organic chemical structures and reactions very easily and quickly.

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EDA

Lepton – Electronic Design Automation

March 15, 2025 Steve Emms GUI, Scientific

Lepton EDA is a suite of software tools for designing electronics. It provides schematic capture, netlisting into over 30 netlist formats, and many other features.

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EDA

Horizon EDA – Electronic Design Automation package

March 14, 2025 Steve Emms GUI, Scientific

Horizon EDA supports an integrated end-to-end workflow for printed circuit board design including parts management and schematic entry.

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Chemistry

element – periodic table on the command line

March 14, 2025 Steve Emms CLI, Scientific

element shows the periodic table and more on the command line.

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EDA

DIYLC – circuit layout and schematic drawing tool

March 13, 2025 Steve Emms GUI, Scientific

DIY Layout Creator (DIYLC) is a specialized software tool designed for hobbyists and electronics enthusiasts to create circuit layouts.

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Machine Learning

Machine Learning in Linux: RMBG-2-Studio

March 12, 2025 Steve Emms GUI, Reviews, Scientific

RMBG-2-Studio is an enhanced background remove and replace app built around BRIA-RMBG-2.0.

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Machine Learning

Machine Learning in Linux: DiffRhythm – AI song generation

March 9, 2025 Steve Emms Multimedia, Reviews, Scientific

DiffRhythm is billed as a blazingly fast and embarrassingly simple end-to-end full-length song generation with latent diffusion.

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Bioinformatics

cramino – BAM/CRAM quality evaluation

March 7, 2025 Steve Emms Scientific

cramino is a tool for quick quality assessment of cram and bam files, intended for long read sequencing.

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Machine Learning in Linux: Pinokio – Easy Installation of AI Apps

March 3, 2025 Steve Emms GUI, Reviews, Scientific

Pinokio describes itself as a browser that lets you install, run, and manage server applications on your local machine.

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Chemistry

multiElement – alternative versions of the periodic table of chemical elements

March 3, 2025 Steve Emms GUI, Scientific

multiElement offers complete encyclopedic information about each chemical element.

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Chemistry

P-Table – terminal TUI scientific program

February 28, 2025 Steve Emms Scientific, TUI

P-Table is a beautiful TUI periodic table for Linux terminals coded in C with no extra dependencies.

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Machine Learning

Machine Learning in Linux: Fooocus – image generating software

February 26, 2025 Steve Emms Reviews, Scientific

Fooocus is image generating software that allows users to only focus on text prompts to generate images. It works offline.

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Bioinformatics

GenomeTools – genome analysis software

February 24, 2025 Steve Emms Scientific

The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics).

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Machine Learning

Machine Learning in Linux: Jan – alternative to ChatGPT

February 24, 2025 Steve Emms Reviews, Scientific

Jan is a ChatGPT-alternative that runs 100% offline on your desktop. This is free and open source software.

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Bioinformatics

Genome Analysis Toolkit (GATK)

February 21, 2025 Steve Emms Scientific

GATK is a genomic analysis toolkit focused on variant discovery.

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