The Spark Notebook is aimed at enterprise environments, providing data scientists and data engineers with an interactive web-based editor.
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Category: Scientific
BeakerX – Successor to Beaker Notebook
BeakerX is a collection of kernels and extensions to the Jupyter interactive computing environment.
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Apache Zeppelin – Multi-purpose Notebook
Apache Zeppelin is a web-based notebook that enables interactive data analytics.
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nteract – Notebooks on your Desktop
nteract is a desktop-based interactive computing application that is focused on accessibility and composability.
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Jupyter Notebook – Data Science Notebook
The Jupyter Notebook is a server-client web application to create/share documents containing live code, equations, and visualizations.
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JupyterLab – Data Science Notebook
JupyterLab is an extensible environment for interactive and reproducible computing.
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Apollo – genome annotation editor
Apollo is a collaborative, real-time, genome annotation editor. The stack is a Java web application / database backend.
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Artemis – genome viewer and annotation tool
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses.
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JBrowse – fast, scalable genome browser
JBrowse is a fast, scalable genome browser built completely with JavaScript and HTML5. It can run on your desktop, or embedded in a website.
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Integrated Genome Browser – visualization for genome-scale data
Integrated Genome Browser (IGB) is a fast, free, and highly customizable genome browser you can use to view and explore big genomic datasets.
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Genome Workbench – rich set of integrated tools for studying and analyzing genetic data
NCBI Genome Workbench is an integrated application for viewing and analyzing sequences.
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Tablet – graphical viewer for next generation sequence assemblies and alignments
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
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fre:ac – audio converter and CD ripper
fre:ac is an audio converter and CD ripper that supports a wide range of popular formats and encoders.
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Asunder – graphical audio CD ripper and encoder
Asunder is a graphical Audio CD ripper and encoder for Linux. It supports a wide variety of formats.
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Bioconductor – tools for the analysis and comprehension of high-throughput genomic data
Bioconductor is a software project which provides tools for the analysis and comprehension of high-throughput genomic data.
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Biopython – tools for biological computation written in Python
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
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BioPerl – computational molecular biology tools
BioPerl is a collection of Perl tools for computational molecular biology used by large and small academic laboratories, and pharmaceuticals.
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Integrative Genomics Viewer – high-performance visualization tool for interactive exploration of large, integrated genomic datasets
The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.
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InterMine – integrate biological data sources
InterMine is a data warehouse system for the integration and analysis of biological data.
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UGENE – bioinformatics software
UGENE is a cross-platform set of integrated bioinformatics software integrating well-known biological tools and algorithms.
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