Bioinformatics Archives

cramino – BAM/CRAM quality evaluation

cramino is a tool for quick quality assessment of cram and bam files, intended for long read sequencing.

The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics).

GATK is a genomic analysis toolkit focused on variant discovery.

abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation.

AliView is an alignment viewer and editor for bioinformatics that aims to be one of the fastest and most intuitive to use.

mothur fills the bioinformatics needs of the microbial ecology community. It’s software for describing and comparing microbial communities.

Bioconductor is a software project which provides tools for the analysis and comprehension of high-throughput genomic data.

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.

BioPerl is a collection of Perl tools for computational molecular biology used by large and small academic laboratories, and pharmaceuticals.

The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.