Bioinformatics Archives

Bioconductor – tools for the analysis and comprehension of high-throughput genomic data

Bioconductor is a software project which provides tools for the analysis and comprehension of high-throughput genomic data.

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.

BioPerl is a collection of Perl tools for computational molecular biology used by large and small academic laboratories, and pharmaceuticals.

The Integrative Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

InterMine is a data warehouse system for the integration and analysis of biological data.

UGENE is a cross-platform set of integrated bioinformatics software integrating well-known biological tools and algorithms.

BioJava is a project dedicated to providing Java tools for processing biological data.

The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.

EMBOSS is The European Molecular Biology Open Software Suite developed for the needs of the molecular biology (e.g. EMBnet) user community.

Clustal Omega is a multiple sequence alignment program for protein and DNA/RNA using seeded guide trees and HMM profile-profile techniques.

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.

The Taverna workbench is an open source software tool for designing and executing bioinformatics workflows created by the myGrid project.

geWorkbench (genomics Workbench) is a Java-based open-source platform for integrated genomics.

The Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).

GROMACS is a molecular dynamics simulator, with building and analysis tools. It’s a versatile package to perform molecular dynamics.